Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs1252647 chr2:30742514 G/A 4.49E-7 118 38.58 45.87 13.23 KM Plot
THYM rs12526524 chr6:72885609 G/A 0.000147 118 38.23 50.12 17.77 KM Plot
THYM rs12541368 chr8:1399345 A/G 4.15E-7 118 44.3 38.9 8.5 KM Plot
THYM rs12542007 chr8:50121785 C/T 2.31E-10 119 46.27 50.1 25.83 KM Plot
THYM rs12542327 chr8:50147272 C/T 2.69E-10 118 46.27 50.82 25.83 KM Plot
THYM rs12544125 chr8:50145382 T/C 2.69E-10 118 46.27 50.82 25.83 KM Plot
THYM rs12544204 chr8:50070412 C/A 2.76E-10 118 48.33 49.4 25.83 KM Plot
THYM rs12546677 chr8:50209624 G/A 3.73E-10 118 46.27 49.75 25.83 KM Plot
THYM rs12547148 chr8:50167898 C/T 2.69E-10 118 46.27 50.82 25.83 KM Plot
THYM rs12549711 chr8:131706874 A/T 0 118 44.38 27.2 2.9 KM Plot
THYM rs12573849 chr11:11852144 G/T 0.000112 118 41.77 42.73 13.35 KM Plot
THYM rs12575176 chr11:11837207 C/T 0.000112 118 41.77 42.73 13.35 KM Plot
THYM rs12575179 chr11:11837252 C/A 0.000112 118 41.77 42.73 13.35 KM Plot
THYM rs12577572 chr11:11845467 C/T 0.000112 118 41.77 42.73 13.35 KM Plot
THYM rs12593463 chr15:25859669 A/G 0.00014 119 28.43 60.13 40.67 KM Plot